RNA-Seq Workshop October 31 - November 1 2019
The agenda of LeedsOmics Introduction to RNA-Seq Data Analysis Workshop on Thursday 31st October and Friday 1st November 2019
Instructors: Dapeng Wang, Elton Vasconcelos, Chew Cheng
Day 1 (Thursday 31st October 2019)
| Time | Session | Content | Instructor | Duration | Venue |
| 09:10 | Registration | 20min | Common room | ||
| 09:30 | Session 1 | HPC environment and Linux command line | Dapeng Wang | 1h20min | Cluster 11.06 Worsley Building |
| 10:50 | Break | 15min | Common room | ||
| 11:05 | Session 2 | Data QC and preprocessing | Dapeng Wang | 1h25min | Cluster 11.06 Worsley Building |
| 12:30 | Lunch | 45min | Common room | ||
| 13:15 | Session 3 | Read alignment | Dapeng Wang | 1h30min | Cluster 11.06 Worsley Building |
| 14:45 | Break | 15min | Common room | ||
| 15:00 | Session 4 | BAM manipulation | Chew Cheng | 1h30min | Cluster 11.06 Worsley Building |
| 16:30 | End |
Day 2 (Friday 1st November 2019)
| Time | Session | Content | Instructor | Duration | Venue |
| 09:30 | Session 1 | BAM visualization | Elton Vasconcelos | 1h20min | Cluster 11.06 Worsley Building |
| 10:50 | Break | 15min | Common room | ||
| 11:05 | Session 2 | Obtain read counts | Dapeng Wang | 1h25min | Cluster 11.06 Worsley Building |
| 12:30 | Lunch | 45min | Common room | ||
| 13:15 | Session 3 | Differential expression analysis | Chew Cheng | 1h30min | Cluster 11.06 Worsley Building |
| 14:45 | Break | 15min | Common room | ||
| 15:00 | Session 4 | Visualization | Elton Vasconcelos | 1h20min | Cluster 11.06 Worsley Building |
| 16:20 | Application examples 1 | Chew Cheng | 5min | Cluster 11.06 Worsley Building | |
| 16:25 | Application examples 2 | Elton Vasconcelos | 5min | Cluster 11.06 Worsley Building | |
| 16:30 | End |
