RNA-Seq Workshop Feb 20-21 2019
The agenda of LeedsOmics Introduction to RNA-Seq Data Analysis Workshop on 20-21 Feb 2019
Instructors: Dapeng Wang, Elton Vasconcelos, Chew Cheng
Helpers: Ali Taylor, Katerina Douka, Isabel Birds
Day 1 (Wednesday Feb 20th, 2019)
| Time | Content | Instructor | Duration | Venue |
| 9:10 | Registration (Tea/Coffee) | Cluster 11.06 Worsley Building | ||
| 9:30 | HPC environment and Linux command line | Dapeng Wang | 1h30min | Cluster 11.06 Worsley Building |
| 11:00 | Break (Tea/Coffee) | Common room | ||
| 11:15 | Data QC and preprocessing | Dapeng Wang | 1h15min | Cluster 11.06 Worsley Building |
| 12:30 | Lunch | Common room | ||
| 13:15 | Read alignment | Dapeng Wang | 1h30min | Cluster 11.06 Worsley Building |
| 14:45 | Break (Tea/Coffee) | Common room | ||
| 15:00 | BAM manipulation | Chew Cheng | 1h | Cluster 11.06 Worsley Building |
| 16:00 | BAM visualization | Elton Vasconcelos | 30min | Cluster 11.06 Worsley Building |
| 16:30 | End |
Day 2 (Thursday Feb 21st, 2019)
| Time | Content | Instructor | Duration | Venue |
| 9:30 | Obtain read counts | Dapeng Wang | 1h30min | Cluster 11.06 Worsley Building |
| 11:00 | Break (Tea/Coffee) | Common room | ||
| 11:15 | Differential expression analysis | Chew Cheng | 1h15min | Cluster 11.06 Worsley Building |
| 12:30 | Lunch | Common room | ||
| 13:15 | Visualization | Elton Vasconcelos | 1h30min | Cluster 11.06 Worsley Building |
| 14:45 | Break (Tea/Coffee) | Common room | ||
| 15:00 | Alternative pipeline | Dapeng Wang | 1h30min | Cluster 11.06 Worsley Building |
| 16:30 | End |
