RNA-Seq Workshop June 26-27 2019

 

The agenda of LeedsOmics Introduction to RNA-Seq Data Analysis Workshop on 26th and 27th June 2019

Instructors: Dapeng Wang, Elton Vasconcelos, Chew Cheng

Helpers: Alysha Taylor

Day 1 (Wednesday 26th June 2019)

Time	Session	Content	Instructor	Duration	Venue
09:10		Registration		20min	Common room
09:30	Session 1	HPC environment and Linux command line	Dapeng Wang	1h20min	Cluster 11.06 Worsley Building
10:50		Break		15min	Common room
11:05	Session 2	Data QC and preprocessing	Dapeng Wang	1h25min	Cluster 11.06 Worsley Building
12:30		Lunch		45min	Common room
13:15	Session 3	Read alignment	Dapeng Wang	1h30min	Cluster 11.06 Worsley Building
14:45		Break		15min	Common room
15:00	Session 4	BAM manipulation	Chew Cheng	1h30min	Cluster 11.06 Worsley Building
16:30		End

Day 2 (Thursday 27th June 2019)

Time	Session	Content	Instructor	Duration	Venue
09:30	Session 1	BAM visualization	Elton Vasconcelos	1h20min	Cluster 11.06 Worsley Building
10:50		Break		15min	Common room
11:05	Session 2	Obtain read counts	Dapeng Wang	1h25min	Cluster 11.06 Worsley Building
12:30		Lunch		45min	Common room
13:15	Session 3	Differential expression analysis	Chew Cheng	1h30min	Cluster 11.06 Worsley Building
14:45		Break		15min	Common room
15:00	Session 4	Visualization	Elton Vasconcelos	1h10min	Cluster 11.06 Worsley Building
16:10		Application examples 1	Chew Cheng	10min	Cluster 11.06 Worsley Building
16:20		Application examples 2	Elton Vasconcelos	10min	Cluster 11.06 Worsley Building
16:30		End