Selected LeedsOmics-related Publications

Garrido N; Lee AJ; Turnbull C; Actis P; Rouncefield-Swales A (2026) Science Outreach: Providing an Authentic Independent Research Opportunity in Materials Science to School Students. Journal of Chemical Education, 103, (6), pp. 2986-2994.

Smith JL; Duncan EJ; Gilbert JDJ (2026) Lasting impacts of sublethal prepupal heatwaves on fertility-related traits of the solitary bee Osmia bicornis. Journal of Thermal Biology, 139.

Andrew B; Westhead DR; Cutillo L (2026) The Cartesian Gaussian additive noise model for directed network inference in omics data. BMC Medical Research Methodology.

Chothani S; Ruiz-Orera J; Tierney JAS; Swirski MI; Tjeldnes H; Kok LW; Clauwaert J; Deutsch EW; Alba MM; Aspden JL; Baranov PV; Bazzini AA; Bruford EA; Brunet MA; Cardon T; Carvunis A-R; Casola C; Choudhary JS; Dean K; Faridi P; Fierro-Monti I; Fournier I; Frankish A; Gerstein M; Hubner N; Jiang Y; Kellis M; Martinez TF; Menschaert G; Ni P; Orchard S; Roucou X; Rozowsky J; Salzet M; Siragusa M; Slavoff S; Ternette N; Vizcaino JA; Wacholder A; Wu W; Xie Z; Yang YT; Moritz RL; Valen E; Mudge J; van Heesch S; Prensner JR; Rackham OJL (2026) An expanded reference catalog of translated open reading frames for biomedical research. Nucleic Acids Research, 54, (6).

Byrd EJ; Crossley JA; Chau CCC; Actis P; Calabrese AN (2026) An ALS-associated mutation in the C-terminal α-helix of TDP-43 uncouples condensate formation and amyloid assembly. Protein Science, 35, (5).

Chau CCC; Gupta V; Heath GR; Wälti C; Actis P (2026) Visualizing and Quantifying microRNA-Induced DNA Origami Separation at the Nanoscale. Angewandte Chemie, 138, (17).

Blakes AJM; Whiffin N; Johnson CA; Ellingford JM; Banka S (2026) Regional nonsense constraint offers biological and clinical insights into genetic disease. Nature Communications, 17.

Kabir M; Hartill V; Farr Iii GH; Shaikh Qureshi WM; Baross SL; Doig AJ; Talavera D; Waterfield MR; Keavney BD; Maves L; Johnson CA; Hentges KE (2026) A machine learning classifier to identify and prioritise genes associated with murine cardiac development. PLOS Genetics, 22, (2).

Roundhill EA; Vasconcelos EJR; Davies J; Burchill SA (2026) Characterisation of Bespoke Patient-Derived In Vitro Models of Ewing Sarcoma. Cancers, 18, (3).

Ward EL; Birds I; O’Connell MJ; Westhead DR; Aspden JL (2026) InspectorORF: a tool for visualising Ribo-Seq and additional genomic or transcriptomic data. Bioinformatics Advances, 6, (1).

Cairney P; de Vasconcelos ER; McConkey GA (2026) Toxoplasma gondii infection induces extracellular vesicle miRNAs in synaptic plasticity and neural mechanisms. Extracellular Vesicles and Circulating Nucleic Acids, 7.

Bracuti A; Hudson ZL; Pidcock EH; Yoon K; Duncan EJ (2026) Age and QMP exposure affect the nutritional preferences of caged Apis mellifera worker honeybees. Apidologie, 57.

Agapiou M; Norris K; Hopes T; Ward E; Hobor F; Bretman A; Edwards TA; Aspden JL (2026) Held out wings RNA binding activity in the cytoplasm during early spermatogenesis. Communications Biology.

Smithson CH; Duncan EJ; Sait SM; Bretman A (2026) Expression of heat shock proteins and thermal sensitivity of male fertility across six Drosophila species. Journal of Evolutionary Biology, 39, (4), pp. 451-459.

Bocking RA; Dixon TM; Parke B; Hashemi P; Bourne RA; Actis P; Menzel R (2026) Nanomaterial Modification of Ultramicroelectrodes Using Design-of-Experiments Principles. ACS Electrochemistry, 2, (1), pp. 101-112.

Deutsch EW; Kok LW; Mudge JM; Valls CF; Jungreis I; Ruiz-Orera J; Sun Z; Kusebauch U; Fierro-Monti I; Abelin JG; Alba MM; Aspden JL; Bandyopadhyay S; Banerjee K; Baranov PV; Bazzini AA; Bourassa F; Bruford EA; Calviello L; Carr SA; Carvunis A-R; Chothani S; Clauwaert J; Dean K; Faridi P; Frankish A; Goodale A; Green T; Hubner N; Ingolia NT; Kellis M; Magrane M; Martin MJ; Martinez TF; Menschaert G; Ohler U; Orchard S; Potter A; Rackham OJL; Rees MG; Root DE; Roth JA; Roucou X; Sialana FJ; Slavoff SA; Świrski MI; Tierney JAS; Trifiro F-A; Valen E; Vasylieva V; Wacholder A; Wang S; Wang L; Weissman JS; Wu W; Xie Z; Choudhary JS; Bassani-Sternberg M; Vizcaíno JA; Ternette N; Brunet MA; Moritz RL; Prensner JR; van Heesch S (2026) Expanding the human proteome with microproteins and peptideins. Nature, 654, (13), pp. 813-825.

Bracuti A; Hudson ZL; Yoon K; Duncan EJ (2026) Queen mandibular pheromone prevents, but does not reverse, worker reproduction in Apis mellifera, unlike in Drosophila melanogaster. Journal of Insect Physiology, 173, pp. 105042.

Chaurasia A; Shukla A; Pande S; Purushothama G; Ashokan AK; Majethia P; Kaur N; Upadhyai P; Quadri N; Bhavani GS; Narayanan DL; Nayak SS; Nampoothiri S; Sabir AH; Mohammed AA; Shaw S; Hartill VL; Watson CM; Johnson CA; Alshammari A; Fry AE; Poulter JA; Newman WG; Kasher PR; Banka S; Girisha KM (2026) Systematic analysis of homozygous autosomal copy number losses in exomes improves diagnostic yield and uncovers ultra-rare recessive disorders. European Journal of Human Genetics, 34, pp. 1059-1069.

Goodman SJ; Carr IM (2026) User Guided Selection and Alignment of Sequence Data by GeneMatrix. Journal of Molecular Evolution, 94, pp. 541-548.

Byrd EJ; Norgate EL; Crossley JA; Chau CCC; Schiffrin B; Kulak A; Radford SE; Actis P; Calabrese AN; Sobott F (2026) Nanopipettes Enable Native Mass Spectrometry Studies of the Intrinsically Disordered Protein α-Synuclein in Biochemical Buffers. Analytical Chemistry, 98, (22), pp. 16219-16233.

Jennings C; Broad A; Godson L; Clarke E; Westhead D; Treanor D (2026) AI in Cancer Prognosis: A Systematic Review of Multimodal Models Combining Pathology Images and High-Throughput Omics. Cancer Informatics, 25.

Sæterdal Kømurcu K; Zawadzka ME; Meszka I; Aizenshtadt A; Hrušková H; Aakervik LE; Thorne JL; Wilson SR; Krauss SJK; Røberg-Larsen H (2026) A Validated Mass Spectrometry Platform for Oxysterol Analysis of Single Human Gastruloids and Liver Organoids. Analytical Chemistry, 98, (9), pp. 6792-6804.

Edge JC; Amelkina O; Tinning H; Giovanardi G; Mancinelli E; Gardner S; Vasconcelos EJR; Pensabene V; Forbes K; O'Connell MJ; Ruane P; Forde N (2026) Bovine endometrial organoids: a new tool to study conceptus-maternal interactions in mammals. Biology of Reproduction, 114, (4), pp. 1241-1257.

Chilton CH; Viprey V; Normington C; Moura IB; Buckley AM; Freeman J; Davies K; Wilcox MH (2026) Clostridioides difficile pathogenesis and control. Nature Reviews Microbiology, 24, (3), pp. 215-232.

Harrington EM; Murphy JC; Harper KL; Hayward C; Mottram TJ; Aspden J; Whitehouse A (2025) EMG1 methyltransferase activity affects ribosome occupancy at KSHV uORFs. Cell Reports, 44, (4).

Aspden J; Faller WJ; Barna M; Lund A (2025) Ribosome heterogeneity and specialization. Philosophical Transactions of the Royal Society B Biological Sciences, 380, (1921).

Boyse E; Robinson KP; Carr IM; Valsecchi E; Beger M; Goodman SJ (2025) Inferring species interactions from co-occurrence networks with environmental DNA metabarcoding data in a coastal marine food-web. Molecular Ecology, 34, (7).

Beavan AJS; Thuburn V; Fatkhullin B; Cunningham J; Hopes TS; Dimascio E; Chan T; Zhao N; Chau C; Vasconcelos EJR; Wood A; Whitehouse A; Actis P; Davies B; Fontana J; O'Connell MJ; Thomson E; Aspden JL (2025) Specialised ribosomes: Integrating new insights and current challenges. Philosophical Transactions of the Royal Society B, 380, (1921).

Paradiso C; Gratton P; Trucchi E; López-Delgado J; Gargano M; Garizio L; Carr IM; Colosimo G; Sevilla C; Welch ME; Firdaus-Raih M; Noor Mat-Isa M; Goodman SJ; Gentile G (2025) Genomic insights into the biogeography and evolution of Galápagos iguanas. Molecular Phylogenetics and Evolution, 204.

Knapp RA; Lovegrove MR; Norman VC; Duncan EJ (2025) Dietary dopamine supplementation has no effect on ovary activity in queen-less or queen-right honeybee (Apis mellifera) workers. Apidologie, 56.

Chau CCC; Weckman NE; Thomson EE; Actis P (2025) Solid-State Nanopore Real-Time Assay for Monitoring Cas9 Endonuclease Reactivity. ACS Nano, 19, (3), pp. 3839-3851.

Ashi A; Awaji AA; Bond J; Johnson CA; Shaaban AM; Bell SM (2025) Threonine and tyrosine kinase (TTK) mRNA and protein expression in breast cancer; prognostic significance in the neoadjuvant setting. Histopathology, 86, (6), pp. 916-932.

Brown TM; Dunn AM; Quinnell RJ; Clarke E; Cunningham AA; Goodman SJ (2025) An interdisciplinary approach to improving conservation outcomes for parasites. Conservation Biology, 39, (1).

Revilla-González G; González-Montelongo MDC; Vasconcelos EJR; Ureña J; Shi J; Castellano A (2025) Delayed changes in the transcriptomic profile of cerebral arteries in a rat model of subarachnoid hemorrhage. Experimental Neurology, 384, pp. 115074.

Willis LF; Trayton I; Saunders JC; Brùque MG; Birch WD; Westhead DR; Day K; Bond NJ; Devine PWA; Lloyd C; Kapur N; Radford SE; Darton NJ; Brockwell DJ (2025) Rationalising mAb candidate screening using a single holistic developability parameter. Molecular Pharmaceutics, 22, (1), pp. 181-195.

Richardson L; Hughes R; Johnson CA; Egginton S; Peckham M (2025) The role of MEGF10 in myoblast fusion and hypertrophic response to overload of skeletal muscle. Journal of Muscle Research and Cell Motility, 46, (4), pp. 275-292.

Agyemang EG; Confederat S; Mohanan G; Sani MA; Chau C; Charnock D; Wälti C; Tschulik K; Edwards MA; Actis P (2025) Multimodal nanoparticle analysis enabled by a polymer electrolyte nanopore combined with nanoimpact electrochemistry. Faraday Discussions, 257, pp. 303-315.

Soteriou C; Xu M; Connell SD; Tyler AII; Kalli AC; Thorne JL (2025) Two cooperative lipid binding sites within the pleckstrin homology domain are necessary for AKT binding and stabilisation to the plasma membrane. Structure, 33, (1), pp. 181-195.e5.

Lemieux TA; Coles JDR; Haley AL; LaFlamme ML; Steel SK; Scott KM; Provencher JF; Price C; Bennett JR; Barrio IC; Findlay HS; Goodman SJ; Matthews B; Näslund J; Pearce DA; Hollister RD; Mallory ML; Smith PA; Schaepman-Strub G; Cooke SJ (2025) Persistent and Emerging Threats to Arctic Biodiversity and Ways to Overcome Them: A Horizon Scan. Arctic Science, 11, pp. 1-29.

Actis P; Aoki K; Baker LA; Caniglia G; Dang N; Ding Z; Ewing AG; Fu KX; Gooding JJ; Hiramoto K; Jiang D; Kanoufi F; Kasianowicz JJ; Kranz C; Lang S-Y; Li F; Li H; Liu L; Long Y-T; Lu J; Lu S-M; McKelvey K; Mount AR; Ren H; Shao Y; Shen M; Siwy ZS; Takahashi Y; Tang J; Wang H; Wang J-G; Wang K; Wang L; Wang Y; Xia F; Xie R-C; Ying Y-L; Zhang G; Zhao Z (2025) Systems nanoelectrochemistry from single entity to ensemble: general discussion. Faraday Discussions, 257, pp. 399-424.

Actis P; Aoki K; Baker LA; Ding Z; Ewing AG; Fu KX; Gooding JJ; Huang J; Kanoufi F; Kasianowicz JJ; Kim M; Kranz C; Kuttner C; Li F; Liu L; Liu W; Lu J; Lu S-M; McKelvey K; Mount AR; Ren H; Shao Y; Takahashi Y; Tan S; Tang J; Wang H; Wang K; Wang L; Wang W; Xia F; Xiong T; Ying Y-L; Zhai Y; Zhao Z; Zhou Y (2025) Confined nanopore electrochemistry: general discussion. Faraday Discussions, 257, pp. 88-106.

Actis P; Baker LA; Caniglia G; Ding Z; Ewing AG; Fu KX; Gaudin LF; Gooding JJ; Hui J; Jiang D; Kanoufi F; Kasianowicz JJ; Kim M; Kranz C; Kuttner C; Li Y; Liu L; Lu S-M; Luo W; McKelvey K; Mount AR; Ren H; Shao Y; Shen M; Takahashi Y; Tang J; Wang D; Wang L; Wang W; Wang Y; Xie R-C; Xie Y; Ying Y-L; Zhang G; Zhang L; Zhao Z; Zhou Y (2025) Scanning electrochemical probe microscopy: general discussion. Faraday Discussions, 257, pp. 277-302.

Aslett LJM; Avramescu A; Bakewell N; Birds I; Bowler L; Camilleri MPJ; Chung S-C; Clifton DA; Cohen SN; Constantine-Cooke N; Daub EG; Davidson S; Denaxas S; Diaz-Ordaz K; Feltbower R; Gallier S; Gardiner S; Gasperoni F; Goudie RJB; Green RE; Hall M; Holmes C; Hurst JR; Iles MM; Jorge J; Karoune E; Keogh R; King R; King R; Kirk PDW; Klapaukh R; Kouchaki S; Lai AG; Lea N; Leyrat C; Li K; Lilaonitkul W; Lu HY; Lyons T; Mallon AM; Manderson A; Margaritella N; Matteson J; Morley S; Nicholls H; O’Reilly M; Pagel C; Palmer E; Roberts J; Roberts TJ; Robertson DS; Robinson J; Rockenschaub P; Ruddle R; Sapey E; Santos L; Soltan AAS; Gao Smith F; Starr C; Strickson O; Su L; Tackney MS; Thygesen JH; Torralbo A; Turner A; Vallejos CA; Wang C; Whitaker K; Whitehouse T; Westhead DR; Wong WK; Wu Y; Yang L; Zou X (2025) DECOVID: A UK Two-Center Harmonized Database of Acute Care Electronic Health Records for COVID-19 Research. Data, 10, (12).

Taweechai S; Totañes FIG; Westhead D; Herrera-Arozamena C; Foster R; McConkey GA (2025) Validated antimalarial drug target discovery using genome-scale metabolic modeling. Antimicrobial Agents and Chemotherapy, 69, (11).

Helliwell JA; Chilton CH; Young C; Clark EV; Wilkinson L; Fuentes Balaguer A; Bottomley D; Croft J; Corrigan N; Kirby A; Quirke P; Stocken D; Jayne DG; Wood HM (2025) Perioperative changes in the microbiome during rectal cancer surgery: exploratory analysis of the National Institute for Health and Care Research (NIHR) IntAct trial. British Journal of Surgery, 112, (9).

Świrski MI; Tierney JAS; Albà MM; Andreev DE; Aspden JL; Atkins JF; Bassani-Sternberg M; Berry MJ; Biffo S; Boris-Lawrie K; Borodovsky M; Brierley I; Brook M; Brunet MA; Bujnicki JM; Caliskan N; Calviello L; Carvunis A-R; Cate JHD; Cenik C; Chang KY; Chen Y; Chothani S; Choudhary JS; Clark PL; Clauwaert J; Cooley L; Dassi E; Dean K; Diaz J-J; Dieterich C; Dikstein R; Dinman JD; Dmitriev SE; Dontsova OA; Dunham CM; Eswarappa SM; Farabaugh PJ; Faridi P; Fierro-Monti I; Firth AE; Gatfield D; Gebauer F; Gelfand MS; Gray NK; Green R; Hill CH; Hou Y-M; Hübner N; Ignatova Z; Ivanov P; Iwasaki S; Johnson R; Jomaa A; Jovanovic M; Jungreis I; Kellis M; Kieft JS; Kochetov AV; Koonin EV; Korostelev AA; Kufel J; Kulakovskiy IV; Kurian L; Lafontaine DLJ; Larsson O; Loughran G; Lukeš J; Mariotti M; Martens-Uzunova ES; Martinez TF; Matsumoto A; McManus J; Medenbach J; Melnikov SV; Menschaert G; Merchante C; Mikl M; Miller WA; Mühlemann O; Namy O; Nedialkova DD; Nosek J; Orchard S; Ozretić P; Pertea M; Pervouchine DD; Romão L; Ron D; Roucou X; Rubtsova MP; Ruiz-Orera J; Saghatelian A; Salzberg SL; Seale LA; Seoighe C; Sergiev PV; Shah P; Shirokikh N; Slavoff SA; Sonenberg N; Stasevich TJ; Szczesny RJ; Tamm T; Tchórzewski M; Topisirovic I; Tremblay ML; Tuller T; Ulitsky I; Valášek LS; Van Damme P; Viero G; Vizcaino JA; Vogel C; Wallace EWJ; Weissman JS; Westhof E; Whiffin N; Wilson DN; Xie Z; Yewdell JW; Yordanova MM; Yu C-H; Yurchenko V; Zagrovic B; Valen E; Baranov PV (2025) Translon: a single term for translated regions. Nature Methods.

Mottram TJ; Harper KL; Rosas de Vasconcelos EJR; Whitehouse A (2025) Pseudouridine prevalence in Kaposi’s sarcoma-associated herpesvirus transcriptome reveals an essential mechanism for viral replication. Proceedings of the National Academy of Sciences, 122, (38).

Gao Z; Scott JNF; Edwards MP; Casey D; Wang X; Gillen AD; Ryan S; Russell LJ; Moorman AV; de Tute R; Cargo C; Ford AM; Westhead DR; Boyes J (2025) Excised DNA circles from V(D)J recombination promote relapsed leukaemia. Nature, 645, (8081), pp. 774-783.

Peacock CJ; Romeu‐Evans W; Goodman SJ; Hassall C (2025) Evaluating the Supplementary Role of Photogrammetry in Insect Taxonomy: Applications and Limitations of 3D Scanning Technology. Ecology and Evolution, 15, (8).

Websdale A; Al-Hilali Y; Kim B; Williams BJ; Wastall L; Roberg-Larsen H; Hughes TA; Cioccoloni G; Thorne JL (2025) OXYSTEROLS AND PHYTOSTEROLS IN HUMAN PATHOPHYSIOLOGY: Adipocytes in tumour microenvironment promote chemoresistance in triple-negative breast cancer through oxysterols. Redox Experimental Medicine, 2025, (1).

Mungee M; Lukach M; Shortall C; Bell JR; Duncan EJ; Addison F; Brown LE; Kunin W; Hassall C; Neely III RR (2025) Spatio-Temporal Variation in Aerial Arthropod Abundance Revealed by Weather Radars. Global Change Biology, 31, (10).

Bonifácio BS; Leite AB; de Castro Nascimento Sousa AC; Maran SR; Gomes AAS; Vasconcelos EJR; Moretti NS (2025) Beyond Histones: Unveiling the Functional Roles of Protein Acetylation in Prokaryotes and Eukaryotes. Cell Biology International, 49, (10), pp. 1301-1318.

Stewart DI; Vasconcelos EJR; Burke IT; Baker A (2025) Meta‐Transcriptomes From Microcosms From a Cr Impacted Soil Provides Insights Into the Metabolic Response of the Microbial Populations to Acetate Stimulation. Environmental Microbiology Reports, 17, (4).

Karamendin K; Sabyrzhan T; Kydyrmanov A; Kasymbekov Y; Khan Y; Nuralibekov S; Goodman SJ (2025) Virological surveillance of bats in Southern Kazakhstan. Frontiers in Virology, 5.

Boyse E; Goodman SJ; Beger M (2025) Spatial conservation priorities for marine megafaunal predators: Multi‐taxon versus taxon‐specific approaches. Conservation Science and Practice, 7, (8).

Watson CM; Lascelles C; Raynor M; Elpidorou M; Hany U; Crinnion L; Johnson CA; Sheridan E; Markham AF; Poulter JA; Bonthron DT; Carr IM (2025) AgileMultiIdeogram: Rapid Identification and Visualization of Autozygous Regions Using Illumina Short-Read Sequencing Data. Biology, 14, (6).

Ahmed M; Fischer S; Robert KL; Lange KI; Stuck MW; Best S; Johnson CA; Pazour GJ; Blacque OE; Nandadasa S (2025) Cleavage of the Meckel-Gruber syndrome protein TMEM67 by ADAMTS9 uncouples Wnt signaling and ciliogenesis. Nature Communications, 16, (1).

Farrukh S; Martin J; Chilton C; Fox G; Rooney CM (2025) Carbapenemase-producing Enterobactericeae screening: Focused patient insights. Clinical Infection in Practice, 26.

SABYRZHAN TB; KYDYRMANOV AI; NURALIBEKOV SS; KHAN EY; KASSYMBEKOV YT; KUMAR M; GOODMAN S; KARAMENDIN KO; BAIMAKHANOVA BB (2025) A NEW HERPESVIRUS DISCOVERED DURING THE STUDY OF VIRAL DIVERSITY IN BATS OF KAZAKHSTAN. МИКРОБИОЛОГИЯ ЖӘНЕ ВИРУСОЛОГИЯ, (1(48)), pp. 168-179.

Tinning H; Vasconcelos EJR; Wang D; Forde N (2025) A bovine 3D endometrium-on-a-chip reveals the role of conceptus-derived proteins, CAPG and PDI, in conceptus–endometrial communication. Biology of Reproduction, 113, (1), pp. 61-82.

Smith CEL; Streets AJ; Lake AVR; Natarajan S; Best SK; Szymanska K; Karwatka M; Stevenson T; Trowbridge R; Grant G; Grellscheid SN; Foster R; Morrison CG; Mavria G; Bond J; Ong ACM; Johnson CA (2025) Drug and siRNA screens identify ROCK2 as a therapeutic target for ciliopathies. Communications Medicine, 5, (1).

Court R; Lattuada M; Shumeyko N; Baimukanov M; Eybatov T; Kaidarova A; Mamedov EV; Rustamov E; Tasmagambetova A; Prange M; Wilke T; Hassall C; Goodman SJ (2025) Rapid decline of Caspian Sea level threatens ecosystem integrity, biodiversity protection, and human infrastructure. Communications Earth & Environment, 6.

Blandy A; Hopes T; Vasconcelos EJR; Turner A; Fatkhullin B; Agapiou M; Fontana J; Aspden JL (2025) Translational activity of 80S monosomes varies dramatically across different tissues. Nucleic Acids Research (NAR), 53, (8).

Hartill V; Kabir M; Best S; Shaikh Qureshi WM; Baross SL; Lord J; Yu J; Sasaki E; Needham H; Shears D; Roche M; Wall E; Cooper N; Ryan G; Eason J; Johnson R; Keavney B; Hentges KE; Johnson CA (2024) Molecular diagnoses and candidate gene identification in the congenital heart disease cohorts of the 100,000 genomes project. European Journal of Human Genetics.

KUMAR M; KARAMENDIN KO; SABYRZHAN TB; NURALIBEKOV SS; GOODMAN S; KYDYRMANOV AI (2024) ANALYSIS OF THE BACTERIAL MICROBIOME OF CASPIAN SEALS (PUSA CASPICA) THROUGH SHOTGUN METAGENOMIC SEQUENCING. МИКРОБИОЛОГИЯ ЖӘНЕ ВИРУСОЛОГИЯ, (3(46)), pp. 132-145.

Fife C; Williams J; James F; Gregory S; Andreou T; Sunderland A; McKimmie C; Brownlie RJ; Salmond RJ; Heaton S; Errington-Mais F; Hadi Z; Westhead DR; Hall M; Davie A; Emmett A; Lorger M (2024) Natural killer cells are required for the recruitment of CD8+ T cells and the efficacy of immune checkpoint blockade in melanoma brain metastases. Journal for ImmunoTherapy of Cancer, 12, (11).

Lukach M; Dally T; Evans W; Duncan EJ; Bennett L; Addison FI; Chapman JW; Kunin WE; Neely III R; Hassall C (2024) Operationalising weather surveillance radar data for use in ecological research. Ecological Informatics, 84.

Cioccoloni G; Dias I; King J; Lobaccaro J-M; Røberg-Larsen H; Thorne JL (2024) Meeting reports. The Biochemist, 46, (6), pp. 53.

Karamendin K; Goodman SJ; Kasymbekov Y; Kumar M; Nuralibekov S; Kydyrmanov A (2024) Viral metagenomic survey of Caspian seals. Frontiers in Veterinary Science, 11.

Boyse E; Robinson KP; Beger M; Carr IM; Taylor M; Valsecchi E; Goodman SJ (2024) Environmental DNA reveals fine-scale spatial and temporal variation of marine mammals and their prey species in a Scottish marine protected area. Environmental DNA, 6, (4).

Goodman SJ; Carr IM (2024) Drawing mitochondrial genomes with circularMT. Bioinformatics.

Basu B; Karwatka M; China B; McKibbin M; Khan K; Inglehearn CF; Ladbury JE; Johnson CA (2024) Glycogen myophosphorylase loss causes increased dependence on glucose in iPSC-derived retinal pigment epithelium. Journal of Biological Chemistry, 300, (8).

Yoon K; Williams S; Duncan EJ (2024) DNA methylation machinery is involved in development and reproduction in the viviparous pea aphid (Acyrthosiphon pisum). Insect Molecular Biology, 33, (5), pp. 534-549.

Bury A; Pyle A; Vincent AE; Actis P; Hudson G (2024) Nanobiopsy investigation of the subcellular mtDNA heteroplasmy in human tissues. Scientific Reports, 14, (1), pp. 13789.

Wassano NS; da Silva GB; Reis AH; A. Gerhardt J; Antoniel EP; Akiyama D; Rezende CP; Neves LX; Vasconcelos EJR; de Figueiredo FL; Almeida F; de Castro PA; Pinzan CF; Goldman GH; Paes Leme AF; Fill TP; Moretti NS; Damasio A (2024) Sirtuin E deacetylase is required for full virulence of Aspergillus fumigatus. Communications Biology, 7, (1).

De Bem THC; Bridi A; Tinning H; Sampaio RV; Malo‐Estepa I; Wang D; Vasconcelos EJR; Nociti RP; de Ávila ACFCM; Sangalli JR; Motta IG; Ataíde GA; da Silva JCB; Watanabe YF; Gonella‐Diaza A; da Silveira JC; Pugliesi G; Meirelles FV; Forde N (2024) Biosensor capability of the endometrium is mediated in part, by altered miRNA cargo from conceptus‐derived extracellular vesicles. The FASEB Journal, 38, (10).

Wieder N; D’Souza EN; Martin-Geary AC; Lassen FH; Talbot-Martin J; Fernandes M; Chothani SP; Rackham OJL; Schafer S; Aspden JL; MacArthur DG; Davies RW; Whiffin N (2024) Differences in 5'untranslated regions highlight the importance of translational regulation of dosage sensitive genes. Genome Biology, 25, (1).

Stewart DI; Vasconcelos EJR; Burke IT; Baker A (2024) Metagenomes from microbial populations beneath a chromium waste tip give insight into the mechanism of Cr (VI) reduction. Science of The Total Environment, 931.

Atkinson R; Georgiou M; Yang C; Szymanska K; Lahat A; Vasconcelos EJR; Ji Y; Moya Molina M; Collin J; Queen R; Dorgau B; Watson A; Kurzawa-Akanbi M; Laws R; Saxena A; Shyan Beh C; Siachisumo C; Goertler F; Karwatka M; Davey T; Inglehearn CF; McKibbin M; Lührmann R; Steel DH; Elliott DJ; Armstrong L; Urlaub H; Ali RR; Grellscheid S-N; Johnson CA; Mozaffari-Jovin S; Lako M (2024) PRPF8-mediated dysregulation of hBrr2 helicase disrupts human spliceosome kinetics and 5´-splice-site selection causing tissue-specific defects. Nature Communications, 15, (1).

Smithson CH; Duncan EJ; Sait SM; Bretman A (2024) Sensory perception of rivals has trait-dependent effects on plasticity in Drosophila melanogaster. Behavioral Ecology, 35, (3).

Confederat S; Lee S; Vang D; Soulias D; Marcuccio F; Peace TI; Edwards MA; Strobbia P; Samanta D; Wälti C; Actis P (2024) Next‐Generation Nanopore Sensors Based on Conductive Pulse Sensing for Enhanced Detection of Nanoparticles (Small 4/2024). Small, 20, (4).

Marcuccio F; Chau CC; Tanner G; Elpidorou M; Finetti MA; Ajaib S; Taylor M; Lascelles C; Carr I; Macaulay I; Stead LF; Actis P (2024) Single-cell nanobiopsy enables multigenerational longitudinal transcriptomics of cancer cells. Science Advances, 10, (10).

Zhang C; Stelloo E; Barrans S; Cucco F; Jiang D; Tzioni M-M; Chen Z; Li Y; Swennenhuis JF; Makker J; Rásó-Barnett L; Liu H; El-Daly H; Soilleux E; Shah N; Nagumantry SK; Kyaw M; Prahladan MP; Tooze R; Westhead DR; Feitsma H; Davies AJ; Burton C; Johnson PWM; Du M-Q (2024) Non-IG::MYC in diffuse large B-cell lymphoma confers variable genomic configurations and MYC transactivation potential. Leukemia, 38, (3), pp. 621-629.

Tanner G; Barrow R; Ajaib S; Al-Jabri M; Ahmed N; Pollock S; Finetti M; Rippaus N; Bruns AF; Syed K; Poulter JA; Matthews L; Hughes T; Watson E; Johnson C; Varn FS; Bruning-Richardson A; Hogg C; Droop A; Gusnanto A; Care MA; Cutillo L; Westhead DR; Short SC; Jenkinson MD; Brodbelt A; Chakrabarty A; Ismail A; Verhaak RGW; Stead LF (2024) IDHwt glioblastomas can be stratified by their transcriptional response to standard treatment, with implications for targeted therapy. Genome Biology, 25.

Chau C; Mohanan G; Macaulay I; Actis P; Wälti C (2024) Automated Purification of DNA Origami with SPRI Beads. Small, 20, (20), pp. 2308776.

Normington C; Chilton CH; Buckley AM (2024) Clostridioides difficile infections; new treatments and future perspectives. Current Opinion in Gastroenterology, 40, (1), pp. 7-13.

Hentges KE; Johnson CA (2024) Cilia function and dysfunction. Annals of Human Genetics, 88, (1).

Richards SM; Kreutzer R; Gubser Keller C; Greiner G; Ley S; Doelemeyer A; Dubost V; Flandre T; Kirkland S; Carbone W; Pandya R; Knehr J; Roma G; Schuierer S; Bouchez L; Seuwen K; Aebi A; Westhead D; Hintzen G; Jurisic G; Hossain I; Neri M; Manevski N; Balavenkatraman Kumar K; Moulin P; Begrich A; Bertschi B; Huber R; Bouwmeester T; Driver VR; von Schwabedissen M; Schaefer D; Wettstein B; Wettstein R; Ruffner H (2024) Molecular characterization of chronic cutaneous wounds reveals subregion- and wound type-specific differential gene expression. International Wound Journal, 21, (4).

Basu B; Lake AVR; China B; Szymanska K; Wheway G; Bell S; Morrison E; Bond J; Johnson CA (2024) Racgap1 knockdown results in cells with multiple cilia due to cytokinesis failure. Annals of Human Genetics, 88, (1), pp. 45-57.

Young RE; Dunn JC; Vaughan IP; Mallord JW; Orsman JC; Ka M; Diallo MB; Sarr M; Lormee H; Eraud C; Kiss O; Thomas RC; Hamer KC; Goodman S; Symondson WOC (2024) Investigating the association between diet and infection with Trichomonas gallinae in the European turtle dove (Streptopelia turtur). Environmental DNA, 6, (1).

Actis P; Manesse M; Nunes-Kirchner C; Wittstock G; Coffinier Y; Boukherroub R; Szunerits S (2024) Expression of concern: Localized electropolymerization on oxidized boron-doped diamond electrodes modified with pyrrolyl units. Physical Chemistry Chemical Physics, 27, (1), pp. 606.

Wilton-Waddell A; Abi FL; Vasconcelos EJ; Byrne E; Taylor AE; Freeman A; Etal D; Stewart PM; Arlt W; Ajjan R; Tiganescu A (2024) 11[beta]-HSD1 inhibitor efficacy in type 2 diabetes is cortisol-dependent. Endocrine Abstracts.

Chau C; Maffeo C; Aksimentiev A; Radford S; Hewitt E; Actis P (2024) Single molecule delivery into living cells. Nature Communications, 15.

Jefrei E; Xu M; Moore JB; Thorne JL (2024) Phytosterol and phytostanol-mediated epigenetic changes in cancer and other non-communicable diseases: a systematic review. British Journal of Nutrition, 131, (6), pp. 935-943.

Ghuloum FI; Stevens LA; Johnson CA; Riobo-Del Galdo NA; Amer MH (2023) Towards modular engineering of cell signalling: Topographically-textured microparticles induce osteogenesis via activation of canonical hedgehog signalling. Biomaterials Advances, 154.

Kiss RS; Chicoine J; Khalil Y; Sladek R; Chen H; Pisaturo A; Martin C; Dale JD; Brudenell TA; Kamath A; Kyei-Boahen J; Hafiane A; Daliah G; Alecki C; Hopes TS; Heier M; Aligianis IA; Lebrun J-J; Aspden J; Paci E; Kerksiek A; Lütjohann D; Clayton P; Wills JC; von Kriegsheim A; Nilsson T; Sheridan E; Handley MT (2023) Comparative proximity biotinylation implicates the small GTPase RAB18 in sterol mobilization and biosynthesis. Journal of Biological Chemistry, 299, (11).

Zhang P; Goodman SJ; O��Connell MJ; Bai S; Li S (2023) Marine mammal genomes: Important resources for unravelling adaptation and evolution in the marine environment. The Innovation Geoscience, 1, (2).

Hayward CJ; Batty JA; Westhead DR; Johnson O; Gale CP; Wu J; Hall M (2023) Disease trajectories following myocardial infarction: insights from process mining of 145 million hospitalisation episodes. eBioMedicine, 96.

Zhang P; Goodman SJ (2023) Learning from the heaviest ancient whale. The Innovation, 4, (5).

Davies JR; Hilton LK; Jiang A; Barrans SL; Burton C; Johnson PWM; Davies AJ; Du M-Q; Tooze RM; Cucco F; Care MA; Morin RD; Steidl C; Sha C; Westhead DR; Scott DW (2023) Comparison of MHG and DZsig reveals shared biology and a core overlap group with inferior prognosis in DLBCL. Blood Advances, 7, (20), pp. 6156-6162.

Kømurcu KS; Wilhelmsen I; Thorne JL; Krauss S; Wilson SR; Aizenshtadt A; Røberg-Larsen H (2023) Mass Spectrometry Reveals that Oxysterols are Secreted from Non-Alcoholic Fatty Liver Disease Induced Organoids. The Journal of Steroid Biochemistry and Molecular Biology, 232.

Manners O; Baquero-Perez B; Mottram TJ; Yonchev ID; Trevelyan CJ; Harper KL; Menezes S; Patterson MR; Macdonald A; Wilson SA; Aspden JL; Whitehouse A (2023) m6A Regulates the Stability of Cellular Transcripts Required for Efficient KSHV Lytic Replication. Viruses, 15, (6).

Svolkinas L; Holmes G; Dmitrieva L; Ermolin I; Suvorkov P; Goodman SJ (2023) Stakeholder consensus suggest strategies to promote sustainability in an artisanal fishery with high rates of poaching and marine mammal bycatch. People and Nature, 5, (4), pp. 1187-1206.

Larsen ISB; Povolo L; Zhou L; Tian W; Mygind KJ; Hintze J; Jiang C; Hartill V; Prescott K; Johnson CA; Mullegama SV; McConkie-Rosell A; McDonald M; Hansen L; Vakhrushev SY; Schjoldager KT; Clausen H; Worzfeld T; Joshi HJ; Halim A (2023) The SHDRA syndrome-associated gene TMEM260 encodes a protein-specific O-mannosyltransferase. Proceedings of the National Academy of Sciences, 120, (21).

Aspden JL; Wallace EWJ; Whiffin N (2023) Not all exons are protein coding: Addressing a common misconception. Cell Genomics, 3, (4).

Davies AJ; Barrans S; Stanton L; Caddy J; Wilding S; Saunders G; Mamot C; Novak U; McMillan A; Fields P; Collins GP; Stephens R; Cucco F; Sha C; van Hoppe M; Tooze R; Davies JR; Griffiths G; Schuh A; Burton C; Westhead DR; Du M-Q; Johnson PWM (2023) Differential Efficacy From the Addition of Bortezomib to R-CHOP in Diffuse Large B-Cell Lymphoma According to the Molecular Subgroup in the REMoDL-B Study With a 5-Year Follow-Up. Journal of Clinical Oncology, 41, (15), pp. 2718-2723.

Yoon KJ; Cunningham CB; Bretman A; Duncan EJ (2023) One genome, multiple phenotypes: decoding the evolution and mechanisms of environmentally induced developmental plasticity in insects. Biochemical Society Transactions, 51, (2), pp. 675-689.

Kydyrmanov A; Karamendin K; Kasymbekov Y; Kumar M; Mazkirat S; Suleimenova S; Baimukanov M; Carr IM; Goodman SJ (2023) Exposure of wild Caspian seals (Pusa caspica) to parasites, bacterial and viral pathogens, evaluated via molecular and serological assays. Frontiers in Marine Science, 10.

Zhang Z; Burrows K; Fuller H; Speliotes EK; Abeysekera KWM; Thorne JL; Lewis SJ; Zulyniak MA; Moore JB (2023) Non-Alcoholic Fatty Liver Disease and Vitamin D in the UK Biobank: A Two-Sample Bidirectional Mendelian Randomisation Study. Nutrients, 15, (6).

Brownlie RJ; Kennedy R; Wilson EB; Milanovic M; Taylor CF; Wang D; Davies J; Owston HE; Adams EJ; Stephenson S; Caeser R; Gewurz BE; Giannoudis PV; Scuoppo C; McGonagle D; Hodson DJ; Tooze RM; Doody GM; Cook G; Westhead DR; Klein U (2023) Cytokine receptor IL27RA is an NF-kB-responsive gene involved in CD38 upregulation in multiple myeloma. Blood Advances, 7, (15), pp. 3874-3890.

Miles J; Townend S; Milonaitytė D; Smith W; Hodge F; Westhead DR; van Oosten-Hawle P (2023) Transcellular chaperone signaling is an intercellular stress-response distinct from the HSF-1–mediated heat shock response. PLOS Biology, 21, (2).

Boyse E; Beger M; Valsecchi E; Goodman SJ (2023) Sampling from commercial vessel routes can capture marine biodiversity distributions effectively. Ecology and Evolution, 13, (2).

Lovegrove MR; Dearden PK; Duncan EJ (2023) Honeybee queen mandibular pheromone induces a starvation response in Drosophila melanogaster. Insect Biochemistry and Molecular Biology, 154.

Murphy JC; Harrington EM; Schumann S; Vasconcelos EJR; Mottram TJ; Harper KL; Aspden JL; Whitehouse A (2023) Kaposi’s sarcoma-associated herpesvirus induces specialised ribosomes to efficiently translate viral lytic mRNAs. Nature Communications, 14.

Tian X; Thorne JL; Moore JB (2023) Ergothioneine: an underrecognised dietary micronutrient required for healthy ageing? British Journal of Nutrition, 129, (1), pp. 104-114.

Marcuccio F; Soulias D; Chau CCC; Radford SE; Hewitt E; Actis P; Edwards MA (2023) Mechanistic Study of the Conductance and Enhanced Single-Molecule Detection in a Polymer–Electrolyte Nanopore. ACS Nanoscience Au, 3, (2), pp. 172-181.

Thorne JL; Holen I; Corfe BM (2023) 2nd Nutrition and Cancer Networking Meeting Nutrition and Breast Cancer: Translating Evidence into Practice. Proceedings of the Nutrition Society, 82, (1), pp. 58-62.

Dunn JC; Thomas RC; Hipperson H; Sheehan DJ; Orsman C; Mallord J; Goodman S (2023) Evidence for strain-specific virulence of Trichomonas gallinae in African columbiformes. Parasitology, 150, (2), pp. 206-211.

Najera-Cortazar LA; Keen A; Kitching T; Stokes D; Goodman SJ (2023) Phylogenetic analyses reveal bat communities in Northwestern Mexico harbour a high diversity of novel cryptic ectoparasite species. Ecology and Evolution, 13, (2).

Bewicke-Copley F; Korfi K; Araf S; Hodkinson B; Kumar E; Cummin T; Ashton-Key M; Barrans S; van Hoppe S; Burton C; Elshiekh M; Rule S; Crosbie N; Clear A; Calaminici M; Runge H; Hills RK; Scott DW; Rimsza LM; Menon G; Sha C; Davies JR; Nagano A; Davies A; Painter D; Smith A; Gribben J; Naresh KN; Westhead DR; Okosun J; Steele A; Hodson DJ; Balasubramanian S; Johnson P; Wang J; Fitzgibbon J (2023) Longitudinal expression profiling identifies a poor risk subset of patients with ABC-type diffuse large B-cell lymphoma. Blood Advances, 7, (5), pp. 845-855.

Zhang Z; Moon R; Thorne JL; Moore JB (2023) NAFLD and Vitamin D: Evidence for Intersection of MicroRNA Regulated Pathways. Nutrition Research Reviews, 36, (1), pp. 120-139.

Xu X; Valavanis D; Ciocci P; Confederat S; Marcuccio F; Lemineur J-F; Actis P; Kanoufi F; Unwin PR (2023) The New Era of High-Throughput Nanoelectrochemistry. Analytical Chemistry, 95, (1), pp. 319-356.

КЫДЫРМАНОВ АИ; КАРАМЕНДИН КО; КАСЫМБЕКОВ ЕТ; СУЛЕЙМЕНОВА СА; ГУДМАН С (2022) HERPESVIRUSES OF THE CASPIAN SEALS (PUSA CASPICA). МИКРОБИОЛОГИЯ ЖӘНЕ ВИРУСОЛОГИЯ, (2(37)).

Ghuloum FI; Johnson CA; Riobo-Del Galdo NA; Amer MH (2022) From mesenchymal niches to engineered in vitro model systems: Exploring and exploiting biomechanical regulation of vertebrate hedgehog signalling. Materials Today Bio, 17, pp. 100502.

Robbe P; Ridout KE; Vavoulis DV; Dréau H; Kinnersley B; Denny N; Chubb D; Appleby N; Cutts A; Cornish AJ; Lopez-Pascua L; Clifford R; Burns A; Stamatopoulos B; Cabes M; Alsolami R; Antoniou P; Oates M; Cavalieri D; Ambrose JC; Arumugam P; Bevers R; Bleda M; Boardman-Pretty F; Boustred CR; Brittain H; Brown MA; Caulfield MJ; Chan GC; Fowler T; Giess A; Hamblin A; Henderson S; Hubbard TJP; Jackson R; Jones LJ; Kasperaviciute D; Kayikci M; Kousathanas A; Lahnstein L; Leigh SEA; Leong IUS; Lopez FJ; Maleady-Crowe F; McEntagart M; Minneci F; Moutsianas L; Mueller M; Murugaesu N; Need AC; O’Donovan P; Odhams CA; Patch C; Perez-Gil D; Pereira MB; Pullinger J; Rahim T; Rendon A; Rogers T; Savage K; Sawant K; Scott RH; Siddiq A; Sieghart A; Smith SC; Sosinsky A; Stuckey A; Tanguy M; Taylor Tavares AL; Thomas ERA; Thompson SR; Tucci A; Welland MJ; Williams E; Witkowska K; Wood SM; Allan J; Bisshopp G; Blakemore S; Boultwood J; Bruce D; Buffa F; Buggins A; Cohen G; Cwynarski K; Dearden C; Dillon R; Ennis S; Falciani F; Follows G; Forconi F; Forster J; Fox C; Gribben J; Hockaday A; Howard D; Jackson A; Kalakonda N; Khan U; Law P; Lefevre P; Lin K; Maseno S; Moss P; Packham G; Palles C; Parker H; Patten P; Pellagatti A; Pratt G; Ramsay A; Rawstron A; Rose-Zerilli M; Slupsky J; Stankovic T; Steele A; Strefford J; Varadarajan S; Vavoulis DV; Wagner S; Westhead D; Wordsworth S; Zhuang J; Gibson J; Prabhu AV; Schwessinger R; Jennings D; James T; Maheswari U; Duran-Ferrer M; Carninci P; Knight SJL; Månsson R; Hughes J; Davies J; Ross M; Bentley D; Strefford JC; Devereux S; Pettitt AR; Hillmen P; Caulfield MJ; Houlston RS; Martín-Subero JI; Schuh A (2022) Whole-genome sequencing of chronic lymphocytic leukemia identifies subgroups with distinct biological and clinical features. Nature Genetics, 54, pp. 1675-1689.

Chau C; Marcuccio F; Soulias D; Edwards MA; Tuplin A; Radford SE; Hewitt E; Actis P (2022) Probing RNA Conformations Using a Polymer–Electrolyte Solid-State Nanopore. ACS Nano, 16, (12), pp. 20075-20085.

Confederat S; Sandei I; Mohanan G; Wälti C; Actis P (2022) Nanopore fingerprinting of supramolecular DNA nanostructures. Biophysical Journal, 121, (24), pp. 4882-4891.

Knapp RA; Norman VC; Rouse JL; Duncan EJ (2022) Environmentally Responsive Reproduction: Neuroendocrine Signalling and the Evolution of Eusociality. Current Opinion in Insect Science, 53.

Mudge JM; Ruiz-Orera J; Prensner JR; Brunet MA; Calvet F; Jungreis I; Gonzalez JM; Magrane M; Martinez TF; Schulz JF; Yang YT; Albà MM; Aspden JL; Baranov PV; Bazzini AA; Bruford E; Martin MJ; Calviello L; Carvunis A-R; Chen J; Couso JP; Deutsch EW; Flicek P; Frankish A; Gerstein M; Hubner N; Ingolia NT; Kellis M; Menschaert G; Moritz RL; Ohler U; Roucou X; Saghatelian A; Weissman JS; van Heesch S (2022) Standardized annotation of translated open reading frames. Nature Biotechnology, 40, pp. 994-999.

Best S; Yu J; Lord J; Roche M; Watson CM; Bevers RPJ; Stuckey A; Madhusudhan S; Jewell R; Sisodiya SM; Lin S; Turner S; Robinson H; Leslie JS; Baple E; Genomics England Research Consortium; Toomes C; Inglehearn C; Wheway G; Johnson CA (2022) Uncovering the burden of hidden ciliopathies in the 100 000 Genomes Project: a reverse phenotyping approach. Journal of Medical Genetics, 59, (12), pp. 1151-1164.

Zhang H; Lianto P; Li W; Xu M; Moore JB; Thorne JL (2022) Associations between liver X receptor polymorphisms and blood lipids: a systematic review and meta-analysis. Steroids, 185.

Panagiotou ES; Fernandez-Fuentes N; Farraj LA; McKibbin M; Elcioglu NH; Jafri H; Cerman E; Parry DA; Logan CV; Johnson CA; Inglehearn CF; Toomes C; Ali M (2022) Novel SIX6 mutations cause recessively inherited congenital cataract, microcornea, and corneal opacification with or without coloboma and microphthalmia. Molecular Vision, 28, pp. 57-69.

Lukach M; Dally T; Evans W; Hassall C; Duncan EJ; Bennett L; Addison FI; Kunin WE; Chapman JW; III NRR (2022) The development of an unsupervised hierarchical clustering analysis of dual-polarization weather surveillance radar observations to assess nocturnal insect abundance and diversity. Remote Sensing in Ecology and Conservation, 8, (5), pp. 698-716.

Ermolin IV; Svolkinas L; Suvorkov PE; Kholms DZ; Gudman SDZ (2022) Methodology of field research of illegal market of biological resources. JOURNAL OF ECONOMIC SOCIOLOGY-EKONOMICHESKAYA SOTSIOLOGIYA, 23, (1), pp. 125-147.

Thomas RC; Dunn JC; Orsman CJ; Morris AJ; Hipperson H; Grice PV; Hamer KC; Goodman SJ (2022) Successful storage of Trichomonas gallinae on Whatman FTA cards following culture. Conservation Genetics Resources, 14, (2), pp. 225-229.

Addison FI; Dally T; Duncan EJ; Rouse J; Evans WL; Hassall C; Neely RR (2022) Simulation of the Radar Cross Section of a Noctuid Moth. Remote Sensing, 14, (6).

Karunaraj P; Tidswell O; Duncan EJ; Lovegrove MR; Jefferies G; Johnson TK; Beck CW; Dearden PK (2022) Noggin proteins are multifunctional extracellular regulators of cell signalling. Genetics, 221, (1).

Georgiou M; Yang C; Atkinson R; Pan K-T; Buskin A; Molina MM; Collin J; Al-Aama J; Goertler F; Ludwig SEJ; Davey T; Luhrmann R; Nagaraja-Grellscheid S; Johnson CA; Ali R; Armstrong L; Korolchuk V; Urlaub H; Mozaffari-Jovin S; Lako M (2022) Activation of autophagy reverses progressive and deleterious protein aggregation in PRPF31 patient-induced pluripotent stem cell-derived retinal pigment epithelium cells. Clinical and Translational Medicine, 12, (3).

Best S; Inglehearn CF; Watson CM; Toomes C; Wheway G; Johnson CA (2022) Unlocking the potential of the UK 100,000 Genomes Project—lessons learned from analysis of the “Congenital Malformations caused by Ciliopathies” cohort. American Journal of Medical Genetics Part C: Seminars in Medical Genetics, 190, (1), pp. 5-8.

Ermolin I; Svolkinas L; Suvorkov P; Holmes G; Goodman SJ (2022) Fieldwork Challenges Stemming from Doing Studies in Illegal Wildlife Trade (IWT). Ekonomicheskaya Sotsiologiya, 23, (1), pp. 125-153.

Schrander DE; Staal HM; Johnson CA; Calder A; Ghali N; Chudley AE; Stumpel CTRM (2022) Orthopaedic Aspects of SAMS Syndrome. Journal of Pediatric Genetics, 11, (1), pp. 51-58.

Thomas RC; Dunn JC; Dawson DA; Hipperson H; Horsburgh GJ; Morris AJ; Orsman C; Mallord J; Grice PV; Hamer KC; Eraud C; Lormée H; Goodman S (2022) Assessing rates of parasite coinfection and spatiotemporal strain variation via metabarcoding: insights for the conservation of European Turtle Doves Streptopelia turtur. Molecular Ecology, 31, (9), pp. 2730-2751.

Harper KL; Mottram TJ; Anene CA; Foster B; Patterson MR; McDonnell E; Macdonald A; Westhead D; Whitehouse A (2022) Dysregulation of the miR-30c/DLL4 axis by circHIPK3 is essential for KSHV lytic replication. EMBO Reports, 23, (5).

Elpidorou M; Poulter JA; Szymanska K; Baron W; Junger K; Boldt K; Ueffing M; Green L; Livingston JH; Sheridan EG; Johnson CA (2022) Missense mutation of MAL causes a rare leukodystrophy similar to Pelizaeus-Merzbacher disease. European Journal of Human Genetics, 30, (7), pp. 860-864.

Bury AG; Pyle A; Marcuccio F; Turnbull DM; Vincent AE; Hudson G; Actis P (2022) A subcellular cookie cutter for spatial genomics in human tissue. Analytical and Bioanalytical Chemistry, 414, (18), pp. 5483-5492.

Colgan TJ; Arce AN; Gill RJ; Ramos Rodrigues A; Kanteh A; Duncan EJ; Li L; Chittka L; Wurm Y (2022) Genomic signatures of recent adaptation in a wild bumblebee. Molecular Biology and Evolution, 39, (2).

Johnson C; Szymanska K; Logan C; Adams M; Robinson P; Zeqiraj E; Wheway G (2022) Regulation of canonical Wnt signalling by the ciliopathy protein MKS1 and the E2 ubiquitin-conjugating enzyme UBE2E1. eLife, 11.

Richardson L; Wang D; Hughes R; Johnson C; Peckham M (2022) RNA-Seq analysis of a Pax3-expressing myoblast clone in-vitro and effect of culture surface stiffness on differentiation. Scientific Reports, 12, (1).

Liu X; Schjøtt SR; Granquist SM; Rosing-Asvid A; Dietz R; Teilmann J; Galatius A; Cammen K; O Corry-Crowe G; Harding K; Härkönen T; Hall A; Carroll EL; Kobayashi Y; Hammill M; Stenson G; Frie AK; Lydersen C; Kovacs KM; Andersen LW; Hoffman JI; Goodman SJ; Vieira FG; Heller R; Moltke I; Tange Olsen M (2022) Origin and expansion of the world's most widespread pinniped: range-wide population genomics of the harbour seal (Phoca vitulina). Molecular ecology, 31, (6), pp. 1682-1699.

Duncan EJ; Cunningham CB; Dearden PK (2022) Phenotypic Plasticity: What Has DNA Methylation Got to Do with It? Insects, 13, (2).

Lange KI; Best S; Tsiropoulou S; Berry I; Johnson CA; Blacque OE (2022) Interpreting ciliopathy-associated missense variants of uncertain significance (VUS) in Caenorhabditis elegans. Human Molecular Genetics, 31, (10), pp. 1574-1587.

Aspden J; Douka K; Agapiou M; Birds I (2022) Optimization of ribosome footprinting conditions for Ribo-Seq in human and Drosophila melanogaster tissue culture cells. Frontiers in Molecular Biosciences, 8.

Van Eeckhoven J; Horsburgh GJ; Dawson DA; Mayer K; Bretman A; Duncan EJ (2022) Development of a multiplex microsatellite marker set for the study of the solitary red mason bee, Osmia bicornis (Megachilidae). Molecular Biology Reports, 49, (1), pp. 783-788.

Best S; Lord J; Roche M; Watson CM; Poulter JA; Bevers RPJ; Stuckey A; Szymanska K; Ellingford JM; Carmichael J; Brittain H; Toomes C; Inglehearn CF; Johnson CA; Wheway G; Genomics England Research Consortium (2022) Molecular diagnoses in the congenital malformations caused by ciliopathies cohort of the 100,000 Genomes Project. Journal of Medical Genetics, 59, (8), pp. 737-747.

Websdale A; Kiew Y; Chalmers P; Chen X; Cioccoloni G; Hughes TA; Luo X; Mwarzi R; Poirot M; Røberg-Larsen H; Wu R; Xu M; Zulyniak MA; Thorne JL (2022) Pharmacologic and genetic inhibition of cholesterol esterification enzymes reduces tumour burden: a systematic review and meta-analysis of preclinical models. Biochemical pharmacology, 196.

Hopes T; Norris K; Agapiou M; McCarthy CGP; Lewis PA; O'Connell MJ; Fontana J; Aspden JL (2022) Ribosome heterogeneity in Drosophila melanogaster gonads through paralog-switching. Nucleic Acids Research, 50, (4), pp. 2240-2257.

Cioccoloni G; Soteriou C; Websdale A; Wallis L; Zulyniak MA; Thorne JL (2022) Phytosterols and phytostanols and the hallmarks of cancer in model organisms: a systematic review and meta-analysis. Critical Reviews in Food Science and Nutrition, 62, (5), pp. 1145-1165.

Barrans SL; Cucco F; Davies J; van Hoppe M; Mell T; Mercer K; Stanton L; Caddy J; Tooze R; Burton C; Westhead D; Du M; Davies A; Johnson P (2021) MOLECULAR HIGH GRADE (MHG) GENE EXPRESSION PROFILE IN DLBCL IS ENRICHED AMONG PATIENTS WITH EARLY TREATMENT FAILURE. Hematological Oncology, 39, (S2).

Baxter DE; Allinson LM; Al Amri WS; Poulter JA; Pramanik A; Thorne JL; Verghese ET; Hughes TA (2021) MiR-195 and Its Target SEMA6D Regulate Chemoresponse in Breast Cancer. Cancers, 13, (23).

Tanner G; Westhead DR; Droop A; Stead LF (2021) Benchmarking pipelines for subclonal deconvolution of bulk tumour sequencing data. Nature Communications, 12, (1).

Tian X; Cioccoloni G; Sier JH; Naseem KM; Thorne JL; Moore JB (2021) Ergothioneine supplementation in people with metabolic syndrome (ErgMS): protocol for a randomised, double-blind, placebo-controlled pilot study. Pilot and Feasibility Studies, 7, (1).

Lianto P; Hutchinson SA; Moore JB; Hughes TA; Thorne JL (2021) Characterization and prognostic value of LXR splice variants in triple-negative breast cancer. iScience, 24, (10).

Valsecchi E; Arcangeli A; Lombardi R; Boyse E; Carr IM; Galli P; Goodman S (2021) Ferries and Environmental DNA: Underway Sampling From Commercial Vessels Provides New Opportunities for Systematic Genetic Surveys of Marine Biodiversity. Frontiers in Marine Science, 8.

Yang C; Georgiou M; Atkinson R; Collin J; Al-Aama J; Nagaraja-Grellscheid S; Johnson C; Ali R; Armstrong L; Mozaffari-Jovin S; Lako M (2021) Pre-mRNA Processing Factors and Retinitis Pigmentosa: RNA Splicing and Beyond. Frontiers in Cell and Developmental Biology, 9.

Zogopoulos VL; Saxami G; Malatras A; Angelopoulou A; Jen CH; Duddy WJ; Daras G; Hatzopoulos P; Westhead DR; Michalopoulos I (2021) Arabidopsis Coexpression Tool: a tool for gene coexpression analysis in Arabidopsis thaliana. iScience, 24, (8).

Leask M; Lovegrove M; Walker A; Duncan E; Dearden P (2021) Evolution and genomic organization of the insect sHSP gene cluster and coordinate regulation in phenotypic plasticity. Ecology and Evolution, 21.

Vasconcelos EJR; Roy C; Geiger JA; Oney KM; Koo M; Ren S; Oakley BB; Diniz PPVP (2021) Data analysis workflow for the detection of canine vector-borne pathogens using 16 S rRNA Next-Generation Sequencing. BMC Veterinary Research, 17.

Douka K; Birds I; Wang D; Kosteletos A; Clayton S; Byford A; Vasconcelos EJR; O'Connell MJ; Deuchars J; Whitehouse A; Aspden JL (2021) Cytoplasmic long non-coding RNAs are differentially regulated and translated during human neuronal differentiation. RNA, 27, (9), pp. 1082-1101.

Gwili N; Jones SJ; Al Amri W; Carr IM; Harris S; Hogan BV; Hughes WE; Kim B; Langlands FE; Millican-Slater RA; Pramanik A; Thorne JL; Verghese ET; Wells G; Hamza M; Younis L; El Deeb NMF; Hughes TA (2021) Transcriptome profiles of stem-like cells from primary breast cancers allow identification of ITGA7 as a predictive marker of chemotherapy response. British Journal of Cancer, 125, pp. 983-993.

Gonçales RA; Salamanca ALM; Júnior LRB; e Silva KSF; de Vasconcelos EJR; dos Reis TF; Castro RC; C Ruy PD; Romagnoli B; Ruiz J; Pereira M; de A Soares CM; Coelho PSR (2021) In silico identification of glycosylphosphatidylinositol-anchored proteins in Paracoccidioides spp. Future Microbiology, 16, (8), pp. 589-606.

Maran SR; Fleck K; Monteiro-Teles NM; Isebe T; Walrad P; Jeffers V; Cestari I; Vasconcelos EJR; Moretti N (2021) Protein acetylation in the critical biological processes in protozoan parasites. Trends in Parasitology, 37, (9), pp. 815-830.

Harris HC; Buckley AM; Spittal W; Ewin D; Clark E; Altringham J; Bentley K; Moura IB; Wilcox MH; Woodford N; Davies K; Chilton CH (2021) The effect of intestinal microbiota dysbiosis on growth and detection of carbapenemase-producing Enterobacterales within an in vitro gut model. The Journal of hospital infection.

DeBem THC; Tinning H; Vasconcelos EJR; Wang D; Forde N (2021) Endometrium On-a-Chip Reveals Insulin- and Glucose-induced Alterations in the Transcriptome and Proteomic Secretome. Endocrinology, 162, (6).

Oney K; Koo M; Roy C; Ren S; Qurollo B; Juhasz NB; Vasconcelos EJR; Oakley B; Diniz PPVP (2021) Evaluation of a commercial microbial enrichment kit used prior DNA extraction to improve the molecular detection of vector-borne pathogens from naturally infected dogs. Journal of Microbiological Methods, 188, pp. 106163.

Norris K; Hopes T; Aspden JL (2021) Ribosome heterogeneity and specialization in development. WIREs RNA, 12, (4).

Morea EGO; Vasconcelos EJR; Alves CDS; Giorgio S; Myler PJ; Langoni H; Azzalin CM; Cano MIN (2021) Exploring TERRA during Leishmania major developmental cycle and continuous in vitro passages. International Journal of Biological Macromolecules, 174, pp. 573-586.

Want MY; Takemasa T; Singh PK; Thorne JL; Matsuzaki J; Karasik E; Gillard B; Cortez Gomez E; Koya RC; Lugade A; Odunsi K; Battaglia S (2021) WHSC1/NSD2 regulates immune infiltration in prostate cancer. Journal for ImmunoTherapy of Cancer, 9, (2).

Soteriou C; Kalli AC; Connell SD; Tyler AII; Thorne JL (2021) Advances in understanding and in multi-disciplinary methodology used to assess lipid regulation of signalling cascades from the cancer cell plasma membrane. Progress in Lipid Research, 81.

Lara-Reyna S; Poulter JA; Vasconcelos EJR; Kacar M; McDermott MF; Tooze R; Doffinger R; Savic S (2021) Identification of Critical Transcriptomic Signaling Pathways in Patients with H Syndrome and Rosai-Dorfman Disease. Journal of Clinical Immunology, 41, (2), pp. 441-457.

Ahmed S; Glover P; Taylor J; Sha C; Care MA; Tooze R; Davies A; Westhead DR; Johnson PWM; Burton C; Barrans SL (2021) Comparative analysis of gene expression platforms for cell‐of‐origin classification of diffuse large B‐cell lymphoma shows high concordance. British Journal of Haematology, 192, (3), pp. 599-604.

Broad RV; Jones SJ; Teske MC; Wastall LM; Hanby AM; Thorne JL; Hughes TA (2021) Inhibition of interferon-signalling halts cancer-associated fibroblast-dependent protection of breast cancer cells from chemotherapy. British Journal of Cancer, 124, pp. 1110-1120.

Chai G; Webb A; Li C; Antaki D; Lee S; Breuss MW; Lang N; Stanley V; Anzenberg P; Yang X; Marshall T; Gaffney P; Wierenga KJ; Chung BH-Y; Tsang MH-Y; Pais LS; Lovgren AK; VanNoy GE; Rehm HL; Mirzaa G; Leon E; Diaz J; Neumann A; Kalverda AP; Manfield IW; Parry DA; Logan CV; Johnson CA; Bonthron DT; Valleley EMA; Issa MY; Abdel-Ghafar SF; Abdel-Hamid MS; Jennings P; Zaki MS; Sheridan E; Gleeson JG (2021) Mutations in Spliceosomal Genes PPIL1 and PRP17 Cause Neurodegenerative Pontocerebellar Hypoplasia with Microcephaly. Neuron, 109, (2), pp. 241-256.

Chau CC; Hewitt EW; Actis P (2021) The role of macromolecular crowding in single-entity electrochemistry: Friend or foe? Current Opinion in Electrochemistry, 25.

Bensch S; Inumaru M; Sato Y; Lee Cruz L; Cunningham AA; Goodman SJ; Levin II; Parker PG; Casanueva P; Hernández M; Moreno‐Rueda G; Rojo M (2021) Contaminations contaminate common databases. Molecular Ecology Resources, 21, (2), pp. 355-362.

Mahmood T; El-Asrag ME; Poulter JA; Cardno AG; Tomlinson A; Ahmed S; Ahmed A-A; Nazari J; Neill J; Chamali RS; Kiwan N; Ghuloum S; Alhaj HA; Randerson Moor J; Khan S; Al-Amin H; Johnson CA; Woodruff P; Wilkinson ID; Ali M; Clapcote SJ; Inglehearn CF (2021) A recessively inherited risk locus on chromosome 13q22-31 conferring susceptibility to schizophrenia. Schizophrenia Bulletin, 47, (3), pp. 796-802.

Elpidorou M; Best S; Poulter JA; Hartill V; Hobson E; Sheridan E; Johnson CA (2021) Novel loss-of-function mutation in HERC2 is associated with severe developmental delay and paediatric lethality. Journal of Medical Genetics, 58, (5), pp. 334-341.

Hutchinson SA; Websdale A; Cioccoloni G; Røberg-Larsen H; Lianto P; Kim B; Rose A; Soteriou C; Pramanik A; Wastall LM; Williams BJ; Henn MA; Chen JJ; Ma L; Moore JB; Nelson E; Hughes TA; Thorne JL (2021) Liver x receptor alpha drives chemoresistance in response to side-chain hydroxycholesterols in triple negative breast cancer. Oncogene, 40, pp. 2872-2883.