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RNA-Seq Workshop Mar 30-31 2022

The agenda of LeedsOmics Introduction to RNA-Seq Data Analysis Workshop on 30-31 Mar 2022

Instructors: Elton Vasconcelos, Chew Cheng

Helpers: Euan McDonnell and Amber Emmett

Day 1 (Wednesday Mar 30th, 2022)

Time

Session

Content

Instructor

Duration

Venue

09:10

 

Registration

   

Common room

09:30

Session 1

HPC environment and Linux command line

Elton Vasconcelos

1h20min

Cluster 11.06 Worsley Building

10:50

 

Break

 

15min

Common room

11:05

Session 2

Data QC and preprocessing

Elton Vasconcelos / Chew Cheng

1h25min

Cluster 11.06 Worsley Building

12:30

 

Lunch

 

45min

Common room

13:15

Session 3

Read alignment

Elton Vasconcelos

1h30min

Cluster 11.06 Worsley Building

14:45

 

Break

 

15min

Common room

15:00

Session 4

BAM manipulation

Chew Cheng

1h30min

Cluster 11.06 Worsley Building

16:30

 

End

     

 

Day 2 (Thursday Mar 31st, 2022)

Time

Session

Content

Instructor

Duration

Venue

09:30

Session 1

BAM visualization

Elton Vasconcelos

1h20min

Cluster 11.06 Worsley Building

10:50

 

Break

 

15min

Common room

11:05

Session 2

Obtain read counts

Chew Cheng / Elton Vasconcelos

1h25min

Cluster 11.06 Worsley Building

12:30

 

Lunch

 

45min

Common room

13:15

Session 3

Differential expression analysis

Chew Cheng / Elton Vasconcelos

1h30min

Cluster 11.06 Worsley Building

14:45

 

Break

 

15min

Common room

15:00

Session 4

DE visualization

Chew Cheng / Elton Vasconcelos

1h10min

Cluster 11.06 Worsley Building

16:10

 

Enrichment Analysis

Chew Cheng

20 min

Cluster 11.06 Worsley Building

16:30

 

End