RNA-Seq Workshop Mar 30-31 2022
The agenda of LeedsOmics Introduction to RNA-Seq Data Analysis Workshop on 30-31 Mar 2022
Instructors: Elton Vasconcelos, Chew Cheng
Helpers: Euan McDonnell and Amber Emmett
Day 1 (Wednesday Mar 30th, 2022)
|
Time |
Session |
Content |
Instructor |
Duration |
Venue |
|
09:10 |
Registration |
Common room |
|||
|
09:30 |
Session 1 |
HPC environment and Linux command line |
Elton Vasconcelos |
1h20min |
Cluster 11.06 Worsley Building |
|
10:50 |
Break |
15min |
Common room |
||
|
11:05 |
Session 2 |
Data QC and preprocessing |
Elton Vasconcelos / Chew Cheng |
1h25min |
Cluster 11.06 Worsley Building |
|
12:30 |
Lunch |
45min |
Common room |
||
|
13:15 |
Session 3 |
Read alignment |
Elton Vasconcelos |
1h30min |
Cluster 11.06 Worsley Building |
|
14:45 |
Break |
15min |
Common room |
||
|
15:00 |
Session 4 |
BAM manipulation |
Chew Cheng |
1h30min |
Cluster 11.06 Worsley Building |
|
16:30 |
End |
Day 2 (Thursday Mar 31st, 2022)
|
Time |
Session |
Content |
Instructor |
Duration |
Venue |
|
09:30 |
Session 1 |
BAM visualization |
Elton Vasconcelos |
1h20min |
Cluster 11.06 Worsley Building |
|
10:50 |
Break |
15min |
Common room |
||
|
11:05 |
Session 2 |
Obtain read counts |
Chew Cheng / Elton Vasconcelos |
1h25min |
Cluster 11.06 Worsley Building |
|
12:30 |
Lunch |
45min |
Common room |
||
|
13:15 |
Session 3 |
Differential expression analysis |
Chew Cheng / Elton Vasconcelos |
1h30min |
Cluster 11.06 Worsley Building |
|
14:45 |
Break |
15min |
Common room |
||
|
15:00 |
Session 4 |
DE visualization |
Chew Cheng / Elton Vasconcelos |
1h10min |
Cluster 11.06 Worsley Building |
|
16:10 |
Enrichment Analysis |
Chew Cheng |
20 min |
Cluster 11.06 Worsley Building |
|
|
16:30 |
End |
