RNA-Seq Workshop Feb 13-14 2025
The agenda of LeedsOmics Introduction to RNA-Seq Data Analysis Workshop on 5-6 Jun 2024
Instructors: Elton Vasconcelos, Ala Alteia, and Michal Zulcinski
Day 1 (Thursday Feb 13th, 2025)
|
Time |
Session |
Content |
Instructor |
Duration |
Venue |
|
09:15 |
Arrival |
Cluster 11.06 Worsley Building |
|||
|
09:30 |
Session 1 |
HPC environment and Linux command line |
Elton Vasconcelos |
1h20min |
Cluster 11.06 Worsley Building |
|
10:50 |
Break |
15min |
Common room |
||
|
11:05 |
Session 2 |
Data QC and preprocessing |
Elton Vasconcelos / Chew Cheng |
1h25min |
Cluster 11.06 Worsley Building |
|
12:30 |
Lunch |
45min |
Common room |
||
|
13:15 |
Session 3 |
Read alignment |
Elton Vasconcelos |
1h30min |
Cluster 11.06 Worsley Building |
|
14:45 |
Break |
15min |
Common room |
||
|
15:00 |
Session 4 |
BAM manipulation |
Chew Cheng |
1h30min |
Cluster 11.06 Worsley Building |
|
16:30 |
End |
Day 2 (Friday Feb 14th, 2025)
|
Time |
Session |
Content |
Instructor |
Duration |
Venue |
|
09:30 |
Session 1 |
BAM visualization |
Elton Vasconcelos |
1h20min |
Cluster 11.06 Worsley Building |
|
10:50 |
Break |
15min |
Common room |
||
|
11:05 |
Session 2 |
Obtain read counts |
Chew Cheng / Elton Vasconcelos |
1h25min |
Cluster 11.06 Worsley Building |
|
12:30 |
Lunch |
45min |
Common room |
||
|
13:15 |
Session 3 |
Differential expression analysis |
Chew Cheng / Elton Vasconcelos |
1h30min |
Cluster 11.06 Worsley Building |
|
14:45 |
Break |
15min |
Common room |
||
|
15:00 |
Session 4 |
DE visualization |
Chew Cheng / Elton Vasconcelos |
1h10min |
Cluster 11.06 Worsley Building |
|
16:10 |
Enrichment Analysis |
Chew Cheng |
20 min |
Cluster 11.06 Worsley Building |
|
|
16:30 |
End |
