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RNA-Seq Workshop October 31 - November 1 2019

 

The agenda of LeedsOmics Introduction to RNA-Seq Data Analysis Workshop on Thursday 31st October and Friday 1st November 2019

Instructors: Dapeng Wang, Elton Vasconcelos, Chew Cheng

 

Day 1 (Thursday 31st October 2019)

Time Session Content Instructor Duration Venue
09:10   Registration   20min Common room
09:30 Session 1 HPC environment and Linux command line Dapeng Wang 1h20min Cluster 11.06 Worsley Building
10:50   Break   15min Common room
11:05 Session 2 Data QC and preprocessing Dapeng Wang 1h25min Cluster 11.06 Worsley Building
12:30   Lunch   45min Common room
13:15 Session 3 Read alignment Dapeng Wang 1h30min Cluster 11.06 Worsley Building
14:45   Break   15min Common room
15:00 Session 4 BAM manipulation Chew Cheng 1h30min Cluster 11.06 Worsley Building
16:30   End      

Day 2 (Friday 1st November 2019)

Time Session Content Instructor Duration Venue
09:30 Session 1 BAM visualization Elton Vasconcelos 1h20min Cluster 11.06 Worsley Building
10:50   Break   15min Common room
11:05 Session 2 Obtain read counts Dapeng Wang 1h25min Cluster 11.06 Worsley Building
12:30   Lunch   45min Common room
13:15 Session 3 Differential expression analysis Chew Cheng 1h30min Cluster 11.06 Worsley Building
14:45   Break   15min Common room
15:00 Session 4 Visualization Elton Vasconcelos 1h20min Cluster 11.06 Worsley Building
16:20   Application examples 1 Chew Cheng 5min Cluster 11.06 Worsley Building
16:25   Application examples 2 Elton Vasconcelos 5min Cluster 11.06 Worsley Building
16:30   End